Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1002624 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9429
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (75.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9429

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (75.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F004475	Metagenome / Metatranscriptome	436	Y
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F009882	Metagenome / Metatranscriptome	311	Y
F011077	Metagenome / Metatranscriptome	295	Y
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10026241	F000684	N/A	RKIMTLGGYTYQIGDLFTTSKTGVTGRIVKFSPINSKLTRVSLQLANGAQRLAMVSTTK
Ga0247723_100262410	F006844	AGGAG	MAKWEIEVIFEPTGDYMNFVYETDNEDEDSIFNEVANQISIVPNLVEKNEEE
Ga0247723_100262414	F011077	AGG	MDTNLTWAEEENNLWKGWTYSLEKNRYYFNDVGNESLAAFWADEFLNQAYS
Ga0247723_100262416	F004475	GAG	MMSNWTEELSDEHKEQIWHFIVETVKEIREQIAVDIEGTSDLWKAKGLNKSRRTSKAFQISAAIARGQNEIK
Ga0247723_10026242	F009882	AGAAG	MSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEPTYLTSKVTDLEWDLHSARAREESLRSLQGTVRQLEENIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVSFSGTINVPMSEIADFDLSNVTIDVDLSSYEYDADLNVDEVSLEDHY
Ga0247723_10026245	F084233	AGGA	MTLNVEIYEMDYSCSPGGVNCWEVSTNDELCTTGFKTAGEALEYVLDKYPSHELNLNVKSLNWYFKEFADEYAV
Ga0247723_10026249	F007112	AGGAG	MHTLHYVAVEADNKQQAFDKVVVSLSREDGYSPADWSDWHVVGGGRWSTNANKESENNLMGGYNDDPTDVLGFSENKEKFQETINGIAKWKAEAVNRAIKTIDTDRFISDLVDYASEGGRPGNHFDGNKLMNIYAIKEAANMLMGSWIPDSGFYDLEENIAEITYLKERLDKPEQASLQYLVPVDFHF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1002624

Overview

Ecosystem & Geography

Associated Families

Sequences