Scaffold Ga0247723_1002618

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1002618
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9445
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F009746	Metagenome / Metatranscriptome	313	N
F029096	Metagenome	189	Y
F090105	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100261810	F009526	AGG	MPATYITGRNLTLSINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKTATLNVELYLDDSASAGIISALWDAANSAPDTSLAFSFDVNGDTFTGNVFPVFPTVGGAATDVLTTSLSFVVEDGTVARA
Ga0247723_100261811	F009746	N/A	LADLATYRSTLAGTLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALKNLETLIFSVTDLLANNISFLGGWSQPTVQQIGNADMLISQLSVEMVTTN
Ga0247723_100261812	F009679	AGGA	MALITLSELKAVLGIGDIYADAIVQSVADSAENIILSYLTFDDVSIKGVSLTSNVARFYCYDNTFVVGQALTVSKCGAPFDGSRTVTAVGKEDGVSFFEAAITNANITQRHVIPNGRAMLTSQATLYDTTPEVREAAMAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG
Ga0247723_10026183	F090105	AGG	MSFLTWFAHSPIASFVKVFGAGVLGWLLVNADTLGIHPALTIGLVSALPIAINWLNPEYDNYGRANVDETD
Ga0247723_10026188	F029096	GAG	MVMAESRTTITVRPDLADYRGLLKALNVMDKEAQYELKNEVYAISSWTAKGIQQAGFAHPIYPRQASIVAASVKPSRDRVPTVRVGGSRGRVSGGANAGQLLFGNEFGGDRNTYGNLNAFPNGGYRFPARTAREGRGNTGYWIFPTLKAMQPEIKKRWFAACNKVMDSWARYS
Ga0247723_10026189	F009265	AGG	MQYDIKTKQGNNYIVSDESTWLWIEIERDLGYTVTQAAEKMSQGSLDVITCMLYKAAKAAGHTKLPSQQAWVTNEFEGFEVVEESPKES