NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1002535

Scaffold Ga0247723_1002535


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1002535 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9659
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003393Metagenome / Metatranscriptome489Y
F004132Metagenome / Metatranscriptome451Y
F005348Metagenome / Metatranscriptome403Y
F007112Metagenome357Y
F014849Metagenome / Metatranscriptome259Y
F034573Metagenome174Y
F100416Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100253512F004132N/ALHSPVFADIIVLTEKEPLMSDILTQEQLTVSYNPNLLVTYKYVPETYAAPESPTFMTDKVTDIEWQLHKSRSYADQLAARRLDISWLEEQIVEWYDPNYTKEEVLQAIIEHFGFNPTKQIEVQGTVSFSGTINIPLSEIEDFDLSNVTIDVDLNSYEYDADLNVDEVSLEDHY
Ga0247723_100253516F003393GAGGMIDLENDDTIALMDYYKVDILTAGQLMIDDCILVGDEVVSIVEIVSLPDGYTLEVINDFGEREVIEVGEYDQFNLMMLQ
Ga0247723_100253519F100416AGAAGGMGKVKEALMDILEHELCYGYGWLYQGNGIDFDSEACECNPYAISADEIMELKGL
Ga0247723_10025352F034573AGGMYRISRAKRQTNEEKVAVAIGKLLSDFYLDLEKVGYYMARATPYLIYRRSLEVLESAKFQEDLVEHNKLQYQGDR
Ga0247723_100253520F014849AGGMLTNWDLLAIIIALTGCLTVMGLFWKQNIAQQKEIRRLRNELRKLLKV
Ga0247723_100253522F005348AGGMISSVMTFKCDECNGAGYIFWGDNLAYDVEKCECKNFALGTLFTSREAD
Ga0247723_10025355F007112GGAVHTLHYIAVEADSKQEAFDKVVVSLQSNEDGYRLADWSDWHVVGGGRWSTNANKKSENNLMGGYNDDPTDVLGYDKDKDKFQETLVCISKWKSQVMNRAIKEFKPDKFISDMVDYASEGGRSEYNGDTMMSAYTMKEVATMLMGGWTSDSGFYDLSENVAEATYLNERLDKPEQAVRQYLVPVDFHF
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