Scaffold Ga0247723_1002508

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1002508
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9720
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F004840	Metagenome / Metatranscriptome	421	Y
F008132	Metagenome / Metatranscriptome	338	Y
F009530	Metagenome / Metatranscriptome	316	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100250810	F002245	AGG	MSNMMKVPHTVVFEALIDLDKIPANLLPSLISLNKEMIEQMCKGATIHALNESNTLEVANTGNYWAELTIKDTI
Ga0247723_10025082	F009530	AGAAG	MTITYSIWQGSRLLSIDNVAHEAKAIDHLIDTLNASNLGKTQKFTANVMTIKAGE
Ga0247723_100250827	F084239	N/A	MIWKWLLVLCKDYGRRATLTKSSYFLEYMKLHEISLMQDLEKIDYVNEHHFYRCKEAEILNTRHLLSVATDIMNSSNERYE
Ga0247723_10025083	F008132	AGGAG	MMTKWDTIQADVKDQYEYMREEEMYEKLMAEEEDLFGFTKAIQLDHLTDEQLDEVFNMFGDK
Ga0247723_10025087	F004840	GGA	MYKLTCAYDSNAPHWSAEYENEFGAWENFFLFTDWGTADEFSTVNLYTPTGKCYTKVFYRNGMVTVK