Scaffold Ga0247723_1002497

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1002497
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9738
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (62.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003522	Metagenome	481	Y
F004950	Metagenome	417	Y
F011921	Metagenome / Metatranscriptome	285	Y
F024784	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100249712	F011921	N/A	MAMVVYFCVLGVYNMANGLEHIADILKRLNDEIKFDNDKWERENVTTTTLRPSNDATTSTRGESKDEL
Ga0247723_100249722	F004950	AGGAG	MGKGSGRRPLLISEQEAQDNWDKIFKKEKNSDDVSPHAYEYELNKSTGNVEKRFIDGTSKPNESQFNGK
Ga0247723_100249724	F003522	AGGA	VIYKQKILDYIKEPRTIKEIAEHLEANYHTVKNTLSDMRTEGLLHAYKDNNTRLMNYYIPQPHPLQSIFGHTANFTDDQIKGVISHNADDAKHNLQQRTTQETYGQSVAYTLTQYD
Ga0247723_10024974	F024784	GAG	MGRAEKILEVVVWFLIVSGIGWFFYGCYQLIDLFFLRG