Scaffold Ga0247723_1002424

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1002424
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9950
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F092032	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100242410	F001298	AGG	MSLFAEFLPDAKEMVADFPVAGSANSGAITFSCLISDPAVQTVLEAGGYMERTQYSVRLPAATASWSLPDGSIGASTAIISGGVPIPSLAQGKKIVVGGKTVRITTQTYKPGSAWVTLLVIDDNQ
Ga0247723_10024247	F092032	AGCAGG	MCAAVNTGTVCLYGIGPGQQASLFVQSYTVSSGFNNTGMVVDENGRTITARYDDRRSEITVEGVANASNIPALGATLSFTVKTASAYPAGSASVSFSGVITKVDDRGSSKGFVTVSLTAESFEEITY
Ga0247723_10024248	F001055	N/A	VGTLSIRHIVEATLANYLSTQTGLTTIQFLTGDSAVTQTLPKAVVLCDSARTPADLPEGLGNFDCSVRITLFSNADDTTLADHRARCAAISGNMNDLASIQAAFAATGDALCYDVTVRSEDEGIDERSWATSFAYDVLTVLNPD