Scaffold Ga0247723_1002066

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1002066
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11054
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012775	Metagenome	277	Y
F015339	Metagenome	255	Y
F018175	Metagenome	236	Y
F021538	Metagenome	218	Y
F040107	Metagenome	162	N
F060919	Metagenome / Metatranscriptome	132	N
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100206611	F015339	N/A	MNTDPKIYGEEYVRGRIYSFVRFQTYLRKIAHIFCEEFQYDKDEIVEVGLSDDGKTVWIHFKDGTIGFGSELLWDKNIRETFKKHYEVA
Ga0247723_100206614	F018175	GGAGG	VDKSPKSQKEYYQDRIREYEKRTGKSMNVKGVSKMYYDYDTADTIFNYSAALDLLNQKNIYIYHDLLVEEDILSNGTNWLKYGYTKKDDKIYKYYYEIKKWGNEAKELDSDSNKSKVWKAAMLMTKHIGSNFDDFAKENNIELKRDINWALKMIESGKMMSRESNPNITLFPKKYDHAESTITTEDLFAEDWVVVPNKSFEDVLVDLYAGKTIRRKSWSPDWGVGKYARYGKLIYLDLIADDWEVVDVVAEVDAIQKDHIDFRIKTS
Ga0247723_100206615	F021538	N/A	MWYDEDMKTTIINCDCLCHSLHVRPDAESKTVDISLWNYGFNDGKLDWKKRLQILKDGFAYSDLVVLNKEELDKLISTLEEARGQIA
Ga0247723_100206619	F012775	GAG	MKLFSQITRPLIALNLKVRYKRWPEAYYIYRDEDKLMDSLGNIFYYSWEEFIKLHQHILDNAGPVWEIYEEVEFNNL
Ga0247723_10020663	F040107	GGAG	MTGIEAISLLKDGKLLRRTSWESHEKCQAIDFFGQWVVHFVRAKEDEISDEQLKEIFNERFSLIQSSFDDFFGSFDTIDAGEFLHDDWEIVNG
Ga0247723_10020665	F090404	GGAG	MKFSEVVDSLMAGKRVRKTNWESKTAFFLYDKEDNTFDFYEVLDGEACRIQSCTELNLTPKDLMSEFWEVAE
Ga0247723_10020668	F060919	N/A	MGSKKNIYSKEKILGPMTGREALDKLQAGYILRREAWEPDEKCKAYFSDDLWSIRVECDSISPAPEYVPDDPKFAGYMSIFDAIDAGEFLMDDWEIVE