Scaffold Ga0247723_1001955

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1001955
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11498
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F005558	Metagenome	396	Y
F009331	Metagenome / Metatranscriptome	319	Y
F016642	Metagenome	245	N
F017972	Metagenome	237	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100195510	F023834	GGAGG	MSEPGVDYWRAKAQLCRDLALAQIIDGDEKMEKEAGMNLMRMTYALSMVDTFNEGGEDD
Ga0247723_100195513	F055450	GGAGG	MKASEKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTVPVVGVRVRTAEGRGAPVIKENIHRSTDQGNDGGEA
Ga0247723_100195514	F017972	GGAGG	VRTRHLQLVTHEHSVTIKTRSDVSSPYGPVNPASTTLLAQETLRVNQEARLTELLNSLENVVDNLNYKSFTVYDTLTIAMENLRVALSNIATEEDGTDTL
Ga0247723_100195516	F003784	GGAGG	MYDDDRKRLGHDDTDFAAYGLSHLAPGQDEPDNTDTPTTNPLADHAAVTGYRGSGVSTEDLTSFIESFASLRASRVKGLGHDQYSHAKGQKFESFTTSDNIRELIEELADASNYIDFLAIKLLNIQHTIDRVLPDCD
Ga0247723_100195518	F009331	AGGAG	MICESCRTAGDENSVAQYKRAAKFHNKCNDKGCVCQHKTGPGYVKRAGSKVPLMQTQSP
Ga0247723_100195519	F016642	GAGG	MIVRLSRDEVRVCTLLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNDLHPRRAKLPDVGVNFEVRTVRTRGSIPFWSKDSGKIIVGTKILDEDYYSQVEVYGWCNPEEYATMQYRDEAIGGWRVPVSELKEFQ
Ga0247723_10019557	F005558	AGGAGG	MTTDQDSMSWAELAELTHATQVERFNFCMCEDTEPHEHPYDDCPKGA
Ga0247723_10019558	F026864	AGGGGG	MSEQDKMAQFVFTVVIAPANKQYEIELWDFAGTEPKQLSTGTGSNWRTALGEALSKIELPTEKVEKTINDVIKEGVEDEGV