Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1001860 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11866 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (45.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F023103 | Metagenome | 211 | N |
F025459 | Metagenome | 201 | N |
F034182 | Metagenome / Metatranscriptome | 175 | Y |
F080052 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100186012 | F034182 | AGGCGG | MDSHAFHTFIGTSAPAMAVLISFSEVEAWLRIASLLLGICIGAVSLYKMLKAKKP |
Ga0247723_100186019 | F023103 | GAGG | MAKFKFESVKFEQIMTDYATIREVTIPDAVSLNARLLCVELARRTQPFGAEQTSGTIRVKNDIGKIIKNTEQLDEYADRVGSQRIKARLKALIKSGRFDIVEMILRNIGFLNKWTGMEVIGASKMKSVHNEARNKTTGRTKSRGSKLFIASVSDQETYISEVQKRVGISKGGWADCATQLKKVNKGGLLANFPPWVKKAMRSGSGKVQDMTSDIKNPRVHLTNNVPWASNVIPKSEEDNATAVVVVKMRNQMNMILKKRQKTLLET |
Ga0247723_10018604 | F080052 | N/A | MEPLTFLAIFATCMICSFIGGYLIGNIKATCELEQTRKWWMNRQIKRERR |
Ga0247723_10018608 | F025459 | AGGAGG | MKLILEFDETERYEHEVACKGLDILILLDDIDQELRSALKHECGEFAKLDEDTMEAVRAWIWKERSDRNIPELI |
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