NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001852

Scaffold Ga0247723_1001852


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001852 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11912
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (65.62%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006255Metagenome377Y
F007848Metagenome343Y
F017287Metagenome241Y
F027764Metagenome193Y
F046243Metagenome151Y
F086796Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100185214F086796N/AMDYSENYLKIQRLLKDYHNATIKWEYEKATKIAHDLADETIKLEIASVRALKDQWLRS
Ga0247723_100185221F007848GGAMKTTVKDVLGACLLGAVLGGMFAYGVPAKAQTIPMTNSQGYNVGTVQINGNTAQFVNPMGYTTQTATIYPNQVVITTPNGYTQSVVGNTGYTVPRSPPAPPSPRVLQ
Ga0247723_100185223F006255GGAMGELNQLMLEHEEFLESALDDMEYGGELSQEQVDCIRQACGKPKRNNHVNPLLRDVINDFGAIFGGQSFPTIRGDK
Ga0247723_100185229F017287N/AMKMDKYGRRVFEEEAPCDKCDQAPDCKEYEWACRAFSYYVLHGYFESYTVRHPTRGMFNKIFKEDDRALKNYMKSIRAKEQMGVTDLFEKEE
Ga0247723_10018523F046243AGGAMKHMTRTYKKEDAMLRPEHQSTLEKQQKKRQDHNPPLELDDSNILNRKANERMRRKEALSKAMNKYHDVDIVG
Ga0247723_100185231F027764AGGMDIQIEIIKEHEDGSADALVHFDKEGLATLVQAGVISLLKQYIEQEKKTAKKGKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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