NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1001824

Scaffold Ga0247723_1001824


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001824 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12029
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009267Metagenome / Metatranscriptome320N
F011668Metagenome / Metatranscriptome288Y
F025459Metagenome201N
F035667Metagenome171N
F046247Metagenome / Metatranscriptome151N
F048162Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100182417F011668N/AMIVLSFAFLGMAFLTSCAGFNNPALCVKTDYGTFCYELPEIPSLKK
Ga0247723_100182419F048162N/ALKKKRQPTVESDRTEALAEAKRILSEHYDCGLAIVSWEQGGETMHGEFVFGNKYAVEGLAGDSFSILFPDLEEEEEEDEA
Ga0247723_100182420F025459AGGAMTLEYDETERYEHEVACKALDILILVDDIDQELRSALKHECGAFAKLDEDTMEAVRAWIW
Ga0247723_10018243F046247N/AMIILPNEQGWAFDESTSWKLVYDGSTIIFFDETEKAISTQSVLFVGTKDECDAEIARLGLVDVIAQGNDNGLDIHSDAGEGAY
Ga0247723_10018247F009267N/AMKKIKDNELRAAIFGVSVEKLEKDDEILRIQAMEDGPKIVNGRTLRPITALTISWMQRNEVFSGEMDPVWKAAAFTFLHSEPMSTIRGVVNDRAIFINAVDSWIEKNMTHHHETGAMSDEMSKAFDLYNSASPASQPGEGAGSPN
Ga0247723_10018248F035667GAGMEELPFAVGLQLLHADDYANGRHSAWANNNARVDVDALATIEDTLAKYGKIQIRELEI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.