Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1001779 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12193 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (85.19%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003065 | Metagenome | 509 | Y |
F021263 | Metagenome | 219 | Y |
F035674 | Metagenome | 171 | N |
F060611 | Metagenome | 132 | Y |
F089837 | Metagenome | 108 | Y |
F096868 | Metagenome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_10017791 | F089837 | N/A | MPQKLTRAQIKAGFDQVPIETLLSSGEGRTPKISSKAKAFAHAVALGNSKASAYRQSYNPKPAKSTIVTAPYKLAADARIQREIEAYKLAIEAEKHRTPAQLKALLVQQLVQHTLDPEFPPAQRMRALQLIGNLFEVGAFLERKESTVIHKSSDIRARLLDRLQARAPASAPADALELLQEIREGGANHDGD |
Ga0247723_100177916 | F003065 | AGG | MSEPELNIWEKALGWRKRQMIQRQLDPITNKIRNDTLEEVAKEFDNMKNGGDTTAGFAIYVRSMKK |
Ga0247723_100177920 | F035674 | AGGAG | MKPGQEACLRMAQYQYSCRNQDMMWRWLFTWAAWSDHTDFFSDPRPPALKTKKPRRRWKHLTNAETLGIIKQLPNWQTDHLNTFIFKVLVEDKLKEKNSG |
Ga0247723_100177922 | F021263 | GAGG | MTNEEREMDLALADLESEVRRLKKIEQAAQAVVKSFSNSIDYNTWDAALDALEAALKEKP |
Ga0247723_100177926 | F060611 | AGGAGG | MENETTRRYPRTMHEAFNCDNEPISGPYGKEPVWPTYAIFFIVIVAGIILFWSKA |
Ga0247723_10017799 | F096868 | AGG | MLKTMRAKYPGKCSLSGARINPGDFIIYDTDSRTAQLEPDADTIQFTTTSPRVSDVFNFSGREFYRNKQGRCEDAPCCGCCTI |
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