NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1001779

Scaffold Ga0247723_1001779


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001779 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12193
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003065Metagenome509Y
F021263Metagenome219Y
F035674Metagenome171N
F060611Metagenome132Y
F089837Metagenome108Y
F096868Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10017791F089837N/AMPQKLTRAQIKAGFDQVPIETLLSSGEGRTPKISSKAKAFAHAVALGNSKASAYRQSYNPKPAKSTIVTAPYKLAADARIQREIEAYKLAIEAEKHRTPAQLKALLVQQLVQHTLDPEFPPAQRMRALQLIGNLFEVGAFLERKESTVIHKSSDIRARLLDRLQARAPASAPADALELLQEIREGGANHDGD
Ga0247723_100177916F003065AGGMSEPELNIWEKALGWRKRQMIQRQLDPITNKIRNDTLEEVAKEFDNMKNGGDTTAGFAIYVRSMKK
Ga0247723_100177920F035674AGGAGMKPGQEACLRMAQYQYSCRNQDMMWRWLFTWAAWSDHTDFFSDPRPPALKTKKPRRRWKHLTNAETLGIIKQLPNWQTDHLNTFIFKVLVEDKLKEKNSG
Ga0247723_100177922F021263GAGGMTNEEREMDLALADLESEVRRLKKIEQAAQAVVKSFSNSIDYNTWDAALDALEAALKEKP
Ga0247723_100177926F060611AGGAGGMENETTRRYPRTMHEAFNCDNEPISGPYGKEPVWPTYAIFFIVIVAGIILFWSKA
Ga0247723_10017799F096868AGGMLKTMRAKYPGKCSLSGARINPGDFIIYDTDSRTAQLEPDADTIQFTTTSPRVSDVFNFSGREFYRNKQGRCEDAPCCGCCTI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.