Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1001717 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12467 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (80.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002935 | Metagenome | 519 | Y |
F007921 | Metagenome / Metatranscriptome | 342 | Y |
F026561 | Metagenome / Metatranscriptome | 197 | Y |
F038669 | Metagenome / Metatranscriptome | 165 | Y |
F093851 | Metagenome / Metatranscriptome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100171710 | F007921 | GAG | MIDWLVNRLFWWTPLKDAIFNEVKLCQSIDRSMWEHEKNRPTNLTWAEGDRWYGWTYNPKLKRYYFNDIGNESLMSLWEDQWSKENSEFAQDEVW |
Ga0247723_100171718 | F038669 | N/A | MRDIYTEFPPHLQKQVDLGESGTDIMHGHLKNLMYECEQELDPLDKNELEMNYLSGRMDTLTEIYAMTYNLAFAISDRRKLNGTK |
Ga0247723_100171720 | F093851 | GGA | MLGYAATDVDDMIYALDSVLTTINSDDDPWLYNNTWRAMELLRGLQAEGYFDND |
Ga0247723_100171728 | F002935 | AGG | MCGIEACVTDHIKNPWNLLCLSVGTATITLFNERNKMDRRESRMNGYVGTIVDGEKLAAIANGIYALQYSNDFSKCTVDSLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDKTEDIADYIRIFGDRLDSNCYLWQSKMSVSPATISV |
Ga0247723_10017173 | F026561 | GGA | MSMDGTGMVPPPASGAAGAVTSQDATRRNPKQGLRSGMKVDRNRHGIRRETSLIPKPPKKTGRKKV |
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