NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001717

Scaffold Ga0247723_1001717


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001717 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12467
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002935Metagenome519Y
F007921Metagenome / Metatranscriptome342Y
F026561Metagenome / Metatranscriptome197Y
F038669Metagenome / Metatranscriptome165Y
F093851Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100171710F007921GAGMIDWLVNRLFWWTPLKDAIFNEVKLCQSIDRSMWEHEKNRPTNLTWAEGDRWYGWTYNPKLKRYYFNDIGNESLMSLWEDQWSKENSEFAQDEVW
Ga0247723_100171718F038669N/AMRDIYTEFPPHLQKQVDLGESGTDIMHGHLKNLMYECEQELDPLDKNELEMNYLSGRMDTLTEIYAMTYNLAFAISDRRKLNGTK
Ga0247723_100171720F093851GGAMLGYAATDVDDMIYALDSVLTTINSDDDPWLYNNTWRAMELLRGLQAEGYFDND
Ga0247723_100171728F002935AGGMCGIEACVTDHIKNPWNLLCLSVGTATITLFNERNKMDRRESRMNGYVGTIVDGEKLAAIANGIYALQYSNDFSKCTVDSLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDKTEDIADYIRIFGDRLDSNCYLWQSKMSVSPATISV
Ga0247723_10017173F026561GGAMSMDGTGMVPPPASGAAGAVTSQDATRRNPKQGLRSGMKVDRNRHGIRRETSLIPKPPKKTGRKKV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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