Scaffold Ga0247723_1001700

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1001700
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12516
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (96.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010672	Metagenome	300	Y
F019448	Metagenome	229	Y
F091934	Metagenome	107	N
F097185	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100170015	F010672	AGGAGG	MPDIQTAFKSALTKTLTEWDDDEGTNVPVPSSAQPVSISSVTTQGIPMAKKTFNVTNNVSRVTFDYIKNNPGSTRKEIIQALEYQGFGGGSVSSLIAQMRRNKMIHENGGLHYADIEEYRPIKTLKAMNKEKDATPKRKYEKKAVTGIGALLREKLMDMPEPSKEALDAAMRAMGGVTASEPLLHTTQRRAFVSLVRTQDPDEIIKKLTVFQARELYDRLKQIFNA
Ga0247723_100170020	F019448	AGGAG	MTAITKTQMVNACADYEVDWFFDREPAEQREVFRHIQLHGFRGFINYPDDNLFAICVDKGVFLMEE
Ga0247723_100170025	F091934	AGGAG	MRSFIQPRITEVGIVTIRGRDFHMQTISYGSRHQVHIFRKGALHLRGMVFETQALYDQWKNGMHQLDLPF
Ga0247723_10017005	F097185	AGGAG	MTKKQRAYLHIITLPFVISAAVEFLPAWLYWPIAVICGMAWLGACVNLAEVDHD