NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001472

Scaffold Ga0247723_1001472


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001472 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13739
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048854Metagenome147Y
F050233Metagenome / Metatranscriptome145Y
F053996Metagenome140Y
F074591Metagenome / Metatranscriptome119Y
F086842Metagenome110Y
F095177Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100147216F048854AGGMAEEQKENKDNLVALRLNNEQMLAVKQWAHQHNANVSQVIRSAIELMTGAKQ
Ga0247723_100147217F053996AGGAGMRTPSEQLVQTTWMADHKLFANHDAVTPVDWAKVWEVIDDIDHSEFDENQLVIIAVLEFLCGSEMVEVSLDEIANLPELERQAVVDALRLKWSKVEFQENL
Ga0247723_100147219F086842AGGAMNKLEIGQVLTIAMAIDARLGASDENAFRAKVEGWSLSLSETMTFEFARDAIGKHYKTATDSLMPAHLNAMWAAHRSRQHEIDNVRAIGSSPRSQGMPDDVRAKLVELGLKRP
Ga0247723_100147223F074591AGGAMSNWNWTPRARFIGELLVAIAVVGAAWVLFVGTWFALGGN
Ga0247723_100147224F095177AGGTGGMSFVPFSMERASLDDKHKIRKMLEYMGITHPAQQMEFMSALLDKPFDSSKMSKQDFITLRSKLMNIQQTKDKA
Ga0247723_10014729F050233GGTGGMGLIEIGQYAGAITAIALLAGMAIKWGIVKPIKAYIDLATYPISPTANGGKSLPDIAHTVNRIEASVKELDYRLNSIEELVTKPTRQKKSTA
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