NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001443

Scaffold Ga0247723_1001443


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001443 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13928
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F015095Metagenome / Metatranscriptome257Y
F029049Metagenome / Metatranscriptome189Y
F030767Metagenome / Metatranscriptome184Y
F066777Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10014433F030767AGGMATYKTKCRLCAKMTDHIERVVTDNLPPYVKSLQCVKCGVMGIVLMEDLKDADL
Ga0247723_10014434F029049GAGGMAMCTMPSVSKVVLDRSQEIIAHRVGLERTITRNAEVQDASNFGQVYKNWHELVWQEAEAAAAEIAVANYFGDYGFIPSIDNAHDTADVGENIEVKWTKHANGHLILQNRGEGRPNDVAVLVTGYSPVYILLGWMPVHMAKVPKYKHPYQNNYWVPRSNLFEMQYLKRSNYGDV
Ga0247723_10014435F066777AGGAMSELTFIKDGLATTIHDNGDMTVVAAKQCDECFKWHTALGGFNVRDVSGEVVLWLCAQCR
Ga0247723_10014437F007029GAGMGFLDNYEDVNARIKRFRAEFPSGRLVAYIEDIDIIKGTILVKAEAYREYEDMVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRVIGLLTPSEHARPTVQDMQKVETLPADSDPWSTKASIEDMATMASGILEIGKSLGGELVAEAPRCAHGTMVWAEGTAKATGKPWAAYKCTERVRANQCNPYWHVLGSDGKWKPQV
Ga0247723_10014439F015095AGGMERAQLVVGLALGSFTILGLGAGLVRHLVKYYLSELRPDGNGGHNLAGRVDRIEKRVDKIYEMLLEDRLAK
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