NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001416

Scaffold Ga0247723_1001416


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001416 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14076
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (59.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023321Metagenome / Metatranscriptome210Y
F024533Metagenome205Y
F047012Metagenome / Metatranscriptome150Y
F057311Metagenome / Metatranscriptome136Y
F078618Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100141610F047012N/AMAILLAFTANAGQESYRLPFVELQNGSTKIPFVEHEWVLGTERVDWSLYLEKGMLKEHKTMYEFHGATVYKKPYYSDALKTKVSKIYTYGVLNCNEANLYILFEWYVDENENIVFKSTHEFGTYVVEMLTPSSARNDVYNQICKETI
Ga0247723_100141619F078618GGAGMIAEIPYMIVWGYFSAMGWMSANWTVEKVAPDKSETQICSEWKEERQSDNTIQRTRTCEPKK
Ga0247723_10014163F024533N/AMPILKTCPRCNVQHQKRGPYCSRSCGNVREHTEEDKAVRAQKLVEYHQTPEGSATREKSSRIMSAKRKGEEWEEVGQEDFAVDIPDVHDYVSDYDDTWNRAEKW
Ga0247723_10014165F057311GAGMTQRKSSKQKNLQLEIQSKSRFYQPVNRNGWWIKFSTYRDHYILLMIVSRYTAQTIIRYYLDEDEAVAFINFVTTCNPNDLIESA
Ga0247723_10014166F023321AGGAMFLNQPQFPVFYTFNDVTRKAEDAAVKTIDFNKQLMDITIAHFDSITDNQFTTYTKKVATLNENVANDAKKIIKTEKSTTGDTKQK
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