Scaffold Ga0247723_1001414

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1001414
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14100
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F014365	Metagenome	263	Y
F054866	Metagenome	139	Y
F063467	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100141411	F002707	AGG	MTQIEAFTQCLVLALTAPNDQKAQKASDLAEKIAFSLSVDQVEHCKNEALELVGFE
Ga0247723_100141423	F054866	AGG	MSKYTITHGSIAAVQYVTLPDGDKVIVTDARDGSEIALPRLPVEVQAAVNRQFSIIFALPYDDRQGFIHNSIPFDVEVTA
Ga0247723_100141424	F014365	GAGG	MKTFQIFKNVSYEYFIEAETLEEAQNKIIEQNPDYESEELIEWVFLDEHDGADWKYEPVLQSN
Ga0247723_10014146	F063467	GGA	MTREDIIRMAHEARFYIQNDEAYSPSNQADHELTEHLERFAKLVAEHERNEIIEILDASTGYVHMDAIRERT