NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001390

Scaffold Ga0247723_1001390


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001390 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14234
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (51.92%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009749Metagenome / Metatranscriptome313Y
F011754Metagenome / Metatranscriptome287Y
F012023Metagenome / Metatranscriptome284Y
F023522Metagenome209Y
F024537Metagenome / Metatranscriptome205Y
F042301Metagenome / Metatranscriptome158Y
F048947Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100139026F012023AGGMEQIDYAKLNERVVEQAYEAVLTKEQLQKLIQDKFDRATMYHQALAKAPTFSVN
Ga0247723_100139031F042301AGGAGMVKAGSKWLGNGNDKFHVIHVIELDGHTWIHYIKENAPEDSNREYSCYEESFLSRFRELPDD
Ga0247723_100139032F011754AGGAMKIGFSLGRCVRDIVKESVDINDVAFIIAATSIHDEPQLANVIEQYMYRDDDYLYGLDADRCQEVALELWSTNKILQPRRQGLHRHRQPENSVWVDMFPTELSENHSVKSAWDAYRFMLHMTENVDNESVEVFKQ
Ga0247723_100139035F009749AGGAMMYPWILIIAMHSPGGDFIDKQTMGFNSKKDCEAVRVQLPNLDYPMRVKHKGVCVTKDHWEGKKQMPGVAYD
Ga0247723_100139038F023522GAGMIDPDPTVTILRAQRAEEHLKIDQRLMQLLESYHAITLKDDDFSEKLTWCLENCQNKFRDLSDPNGRAWYFQNEQDATMFAMKWA
Ga0247723_100139040F048947GAGMNSAQARRYRRAFRTLEHSVLIDAKKHRDAGKWCLAQFGKRWEAIGKNTDGSWTMFWAGRNDHEKYIFHFVEEQDKLMFILKWA
Ga0247723_100139041F024537N/AMRRDLEKEILDELGTKMQSEIDREVMWGMLKNIGWTRVNLNRFTDNNHAVDITHWLADHCNHAFERRGADFIFESEVDAVNFTLRWQ
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