Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1001349 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14526
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (78.05%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14526

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (78.05%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023321	Metagenome / Metatranscriptome	210	Y
F024533	Metagenome	205	Y
F047012	Metagenome / Metatranscriptome	150	Y
F053899	Metagenome	140	Y
F054799	Metagenome	139	Y
F057311	Metagenome / Metatranscriptome	136	Y
F081259	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100134911	F024533	N/A	MPIQKTCPTCKVTHNKRGPYCSRSCGNIRVHTEEDKAIRSQKLTEYHQTPEGAATREKSSRMTTALNKGENWDEVGVDDFAVGIPDVTDYSADYDWTWQRAEKW
Ga0247723_100134913	F053899	GGA	MKEFDKVMDRIKNLTEFEVQVDIPEDFQFDGVVPYDMSISGDKAFVKVVATDIKEAKQKALEYFHGSKYE
Ga0247723_100134927	F054799	N/A	MKDLLNILPKLLEMMPGIVKFLKYIPILMVLAGIGYGIMYWSQNYRDPFKCVDNQIYEQVRVDSNVYEFKGGFCVEGDNK
Ga0247723_10013493	F047012	GGAG	MKRLFFFVMAALIAVTAQAESYRLPFVEIQNGATKIPFIEQEWVLGTERADWLLYLEKGMFDKQKQPMYEFHAVTAYKKPYHSDGLSADVSKIYTYGVMNCNEANLYIMFEWYVDVNENLIFKSSHEFGAYTVELMTPFTARNDVYNQICKERI
Ga0247723_10013497	F081259	AGGAGG	MIQKMIQWFIKPQLTEIEYYISSHDPKTTSDVEHLINEFNYKRRLQCF
Ga0247723_10013498	F023321	AGGAG	MFLNMPQLPVFYNFNDFSRKSEEAALKTIDFNKEFIDNTIAYFDSITDKQFTTYTQKVSTFNQNVAEDAKKIVKSESAKTKA
Ga0247723_10013499	F057311	N/A	MRRKSSKVSLPKLRLEIEAKTKFWYPVSRNGWWIKFSTYRDHYILLMIVSKYTAQTIIRYYEDESEAVAFINFITTCNPNDLIESA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1001349

Overview

Ecosystem & Geography

Associated Families

Sequences