Scaffold Ga0247723_1001332

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1001332
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14655
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (33.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F005388	Metagenome / Metatranscriptome	402	N
F012771	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10013321	F012771	GAG	MTPTKPKRPTPKIFVVSDDTHKRLKDYATKKGYKLQFVADEAVSEYLKRKEQQ
Ga0247723_100133210	F001964	GGAGG	MSRNLFAPPKFKVQISGAIGWSDLKERVVSFKTVEFRTRKEAEAAAKDLNPGEYTQGRLRVVPVEMPEDYDVYPVAERKSI
Ga0247723_100133212	F002227	N/A	MKLTISSKTNAQTIIDLFNAIITGEVQEHQATPMSIYDDEKHICSIVAANGEQILELIIEREQGDRIVQQGEPETLQ
Ga0247723_100133220	F000922	AGG	MKAEQWTKAKSLYLAGKTWKAIASDLGLNQSTLLSKASREGLPKVRKEMRNMVSSKETVSLESLSALVRSKLAADAASTLERIETYALEGIKDESTREQILGSVAKRSALVFGWSEQGEQASVSINLLGSMPDRAFEVSVTNESETK
Ga0247723_100133222	F005388	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNNVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSAGQALNQATSELTQEMLDVAAATLIRNGATNPDSSGFISFSSDGPVFPLYIGMEASQRIAQNNAALREDLRFADMGSGPGAELLKRIGANRVIKNFRHIPNLFPPRFSYAGGKYTLIQPFTSTSGTKGTVFSVNPSWTTALYEGAFIPTPYVIKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHAVEPVFTNQGMTIIFRRCTGALTQIICS
Ga0247723_10013323	F003748	N/A	MFQVNRKDAGGRYIDAEGEYTVSVTKVEENLDPKGREVCKVTFTTSDGASITDRFLNQENTWFRVNQLVAATNHNVPDGTQVDFLGVKGSYANFLKSMIGLELVITTRFEEYEYNGEKKKTLRLKGMKAVAPVAAETEEKPF