Scaffold Ga0247723_1001277

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1001277
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15023
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000766	Metagenome / Metatranscriptome	899	Y
F003658	Metagenome	474	Y
F008237	Metagenome	336	Y
F012001	Metagenome / Metatranscriptome	284	Y
F012770	Metagenome / Metatranscriptome	277	Y
F020684	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100127715	F003658	N/A	MFDLQGEPTFACICGCLMFEITVMWDREDRTIGWYDLKQKCKECGTLTTAPTPIDGEM
Ga0247723_100127718	F008237	GGA	MNLEWKRIEPWQYVIDAVATEYSRKYQEVDIADIRQSLYQWFLEHPVKLDTWEAIGEKDAKNLIYRSLRNQALDYCQYWMAKSGGYETSDLFFYEADMVEALLPSVLRGEFNVTAKLNLSHTGKQSAPAEGGNLMAMMIEIDYAYWKLPNPDRKLLFFRYVESMDFGDIATELGLTSEDTARMRHKRAIRKLINKIGGFKPYRDDDFAEPTED
Ga0247723_100127721	F012770	AGCAGG	LSEDEFTNNQCNDCGKVFDSSFELIDHVLDDDEEFDPYYALPSGYKLLLGSLLRFLYGNADNPEQIKHITQSTYVALFAAENGYDLIDELVEDMVIKSALQDFDSSLKKLLEEETKDEGE
Ga0247723_100127724	F020684	GAG	VWSYSLTPTEEATVVEVGYQRQKVYFGDPTKNINYSEGDLWELWQHAVCAGSELAFARMVGKNDFVPHYNKWKSELDIPGFGEIRYSFPPVKGMRYSTRDSDELVYVLMSDGLCHKTRRVAPDWVGPQYNAIGWMLGAMCKKDEWRYNDKTWYVPIENLYPMESLELNG
Ga0247723_100127732	F012001	AGGAG	MNTEKLKQIGLSYLRAAAAATIALYTAGQHDPKVLVNAFLAGLVGPVLKALDKSAPEFGKGSK
Ga0247723_100127738	F000766	N/A	VASTAVSPVGKVNKVGSINIEASATLTPSGYLTSGYIRYGTLEPKNFKRLLARGDYTKGSMTLETVDKDGTEYDHITYDSVIFPIEVTTSQPSTAQEYVAYKFILNRDATTTSDGPIFKGYQAKATIATPRQRIMKFPVYCFDVETDRYNVQVGYEGKAQTRLLALEELESNGDVLTWQDLTTGEQRQVVIEQTSFTRMTPPDKRFDGFGGVIDITIRTV