NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1001264

Scaffold Ga0247723_1001264


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001264 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15112
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (75.61%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F007921Metagenome / Metatranscriptome342Y
F012975Metagenome / Metatranscriptome275Y
F037727Metagenome / Metatranscriptome167Y
F074876Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100126410F000473AGGAGMASSMFDDKHFKHGINLFTGEPNKPVFYNQAMAKKIKEIKAPVIGLQMDIARYPDFLAIKLYEDNFIQYQGIKKEMVIDYVGKVKKVIESFGVRCELVGVPSERVL
Ga0247723_100126411F074876N/AVKEYYEIINVVYVHSLKAYGTIEKMGAYASVVKYTKDGIDYQELIENDEFAIIDEIVFEHAEEEK
Ga0247723_100126412F000671GAGGMEKILCYSCNKTKNKLNVRKSSLLPINLLMCETCITSKIEPRWVVILAGRSMGPEHVREFVLKKKYIGNDIAASELLV
Ga0247723_100126413F002060N/AMSLNYTAIIIAIAAAILSGMGTAIIAGIRDSRKEKIRQREREQDHLKMDLKDLKIQLYKVERDLTEWKDKYYSAIQELISVKAELEETLIKLSLIDMDLHSQED
Ga0247723_100126434F007921GAGMINFLVNRIFRWDPLRNAIFDEVRLYQSIDRTMWEYEKSDPTNLTWSEGDRWYGWTYNAELKRYYFDDIGNESLMGLWEDQWNREDNKSNSGQLEYKDKYKDFVEFTDDELF
Ga0247723_100126440F000263GGAMMTAEDIGLPPHLQRMVNAGVSGLDIIHGELKNLMLIAEEDLASALEQEEKSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARDEA
Ga0247723_100126441F037727GGAGMKLHRISLIQDNENEIQDTDNPDWNFLQGQIVATEHLLSVATDIMNASNERE
Ga0247723_10012648F012975AGGAVLNLTLKGVEVFIERSKTKNQESYWDNYDLMIWKSDHSGFTNIKGLFRKDTWGIAERISVDEQGIWKLPGKYVKHFK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.