Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1001264 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15112 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (75.61%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F000473 | Metagenome / Metatranscriptome | 1097 | Y |
F000671 | Metagenome / Metatranscriptome | 945 | Y |
F002060 | Metagenome / Metatranscriptome | 597 | Y |
F007921 | Metagenome / Metatranscriptome | 342 | Y |
F012975 | Metagenome / Metatranscriptome | 275 | Y |
F037727 | Metagenome / Metatranscriptome | 167 | Y |
F074876 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100126410 | F000473 | AGGAG | MASSMFDDKHFKHGINLFTGEPNKPVFYNQAMAKKIKEIKAPVIGLQMDIARYPDFLAIKLYEDNFIQYQGIKKEMVIDYVGKVKKVIESFGVRCELVGVPSERVL |
Ga0247723_100126411 | F074876 | N/A | VKEYYEIINVVYVHSLKAYGTIEKMGAYASVVKYTKDGIDYQELIENDEFAIIDEIVFEHAEEEK |
Ga0247723_100126412 | F000671 | GAGG | MEKILCYSCNKTKNKLNVRKSSLLPINLLMCETCITSKIEPRWVVILAGRSMGPEHVREFVLKKKYIGNDIAASELLV |
Ga0247723_100126413 | F002060 | N/A | MSLNYTAIIIAIAAAILSGMGTAIIAGIRDSRKEKIRQREREQDHLKMDLKDLKIQLYKVERDLTEWKDKYYSAIQELISVKAELEETLIKLSLIDMDLHSQED |
Ga0247723_100126434 | F007921 | GAG | MINFLVNRIFRWDPLRNAIFDEVRLYQSIDRTMWEYEKSDPTNLTWSEGDRWYGWTYNAELKRYYFDDIGNESLMGLWEDQWNREDNKSNSGQLEYKDKYKDFVEFTDDELF |
Ga0247723_100126440 | F000263 | GGA | MMTAEDIGLPPHLQRMVNAGVSGLDIIHGELKNLMLIAEEDLASALEQEEKSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARDEA |
Ga0247723_100126441 | F037727 | GGAG | MKLHRISLIQDNENEIQDTDNPDWNFLQGQIVATEHLLSVATDIMNASNERE |
Ga0247723_10012648 | F012975 | AGGA | VLNLTLKGVEVFIERSKTKNQESYWDNYDLMIWKSDHSGFTNIKGLFRKDTWGIAERISVDEQGIWKLPGKYVKHFK |
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