Scaffold Ga0247723_1001264

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1001264
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15112
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (75.61%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F007921	Metagenome / Metatranscriptome	342	Y
F012975	Metagenome / Metatranscriptome	275	Y
F037727	Metagenome / Metatranscriptome	167	Y
F074876	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100126410	F000473	AGGAG	MASSMFDDKHFKHGINLFTGEPNKPVFYNQAMAKKIKEIKAPVIGLQMDIARYPDFLAIKLYEDNFIQYQGIKKEMVIDYVGKVKKVIESFGVRCELVGVPSERVL
Ga0247723_100126411	F074876	N/A	VKEYYEIINVVYVHSLKAYGTIEKMGAYASVVKYTKDGIDYQELIENDEFAIIDEIVFEHAEEEK
Ga0247723_100126412	F000671	GAGG	MEKILCYSCNKTKNKLNVRKSSLLPINLLMCETCITSKIEPRWVVILAGRSMGPEHVREFVLKKKYIGNDIAASELLV
Ga0247723_100126413	F002060	N/A	MSLNYTAIIIAIAAAILSGMGTAIIAGIRDSRKEKIRQREREQDHLKMDLKDLKIQLYKVERDLTEWKDKYYSAIQELISVKAELEETLIKLSLIDMDLHSQED
Ga0247723_100126434	F007921	GAG	MINFLVNRIFRWDPLRNAIFDEVRLYQSIDRTMWEYEKSDPTNLTWSEGDRWYGWTYNAELKRYYFDDIGNESLMGLWEDQWNREDNKSNSGQLEYKDKYKDFVEFTDDELF
Ga0247723_100126440	F000263	GGA	MMTAEDIGLPPHLQRMVNAGVSGLDIIHGELKNLMLIAEEDLASALEQEEKSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARDEA
Ga0247723_100126441	F037727	GGAG	MKLHRISLIQDNENEIQDTDNPDWNFLQGQIVATEHLLSVATDIMNASNERE
Ga0247723_10012648	F012975	AGGA	VLNLTLKGVEVFIERSKTKNQESYWDNYDLMIWKSDHSGFTNIKGLFRKDTWGIAERISVDEQGIWKLPGKYVKHFK