Scaffold Ga0247723_1001245

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1001245
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15235
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (89.47%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F013279	Metagenome / Metatranscriptome	272	Y
F015702	Metagenome	252	Y
F017972	Metagenome	237	Y
F018135	Metagenome	236	Y
F027417	Metagenome	194	Y
F044984	Metagenome / Metatranscriptome	153	Y
F093528	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100124514	F093528	AGGA	MSEETTTHVFTVVVQAGKKWNKVELFDFSGGEPTPLGQGEGTNWRTALGEALSKITLSSEIPEKTVNDAAKEIAEEKGEDND
Ga0247723_100124515	F015702	AGAAGG	MIKEIKLEYTVHNLVRLSEKVWGDNATEYLAARLDSIATYNQMKVLIDSLKEEAGE
Ga0247723_100124517	F044984	GGAGG	MADDTQRRLETAARKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKKQDELQGKKWVGIDGNTNLGVGIHTRATGANDLAYTSNEGKNQGDNGGKA
Ga0247723_100124518	F017972	GGAGG	VRTRHLQLVTHEHSDTIGKRESVSSPYGPVSPGSTTLLAQETLRANQLAQLLELLNSLESVVESLNYKSFTAYDTLVTATEGVRVALLGIQTDEAGTNADGS
Ga0247723_100124521	F013279	AGGCGG	MQYDYRCPDCNGEITIERSIHEDPRDPSCFECHVSMVRKWDSPAITFKGKGFYSTGG
Ga0247723_10012455	F018135	AGG	MTVEKVGHNGAYVLSDLVADGNGEYLFTRTYYGYTLAQAKAQFKIELKGEGK
Ga0247723_10012457	F027417	GGAGG	MNYDYRVTFVTDYLTITTNVCLELDDTTGNLSDEAYGRAAVKGMNNIEDEIGKINESIINDITVTLILDDEEIEIGSFGEFPPVHVSIIEGEGE
Ga0247723_10012459	F003212	AGGAGG	MKDKWIVALEIDTYDGDPRHWDWEKLSTGSDVIKIISSDFKGRVLPTEGEGE