NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001234

Scaffold Ga0247723_1001234


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001234 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15382
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012098Metagenome / Metatranscriptome283Y
F016389Metagenome / Metatranscriptome247Y
F093195Metagenome / Metatranscriptome106N
F093225Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100123412F093195GGAMAGAIDKGHQSYNDFNSGAAVSQVPLTTVDKKILDFAIKVSRNPVIKTHGQILRNFGMYPPEFWTRAQKLSDHPEVDPQTKEHLSNIFSDPSRPGPMTGGAPINVNGKQFSHGLEW
Ga0247723_100123414F093225GGAMIITIFATVGIITAALLGLRQLIEPYKEKADLFMSWFEDFKRDWSGEEESPGRDRVPGVMERLNRLDGELSSNGGKSTKDVVNKMYDNQGVLMEAFVEMGERLISIEEHLAVNTPKEPV
Ga0247723_10012346F012098AGGMPKAHKLGPKHFVQLTNFPFKWGFKFIVRGWTQEIEPPYRTSTPFIVRLPRYKALVFGAWSGMKNEEEALSTALGRREVTYDDFTKEAGWTPAPDSDREASIDNLYSRFDLMDGAVDVYDWQTYHNLAKTAE
Ga0247723_10012349F016389N/AVQGHAVPLHSHSPRGPFPPEVLAQPQMEVDPQHSDSLHEALDSTRFFKCRACEEVLLETELDNHDCEEINGY
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