Scaffold Ga0247723_1001222

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1001222
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15451
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F026507	Metagenome	197	N
F031795	Metagenome	181	N
F038217	Metagenome	166	Y
F040539	Metagenome	161	Y
F040620	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10012221	F038217	AGG	MTQKNPELPEDKPMGIYLSLNSAISVANWLAPTDVAALTLARRIATALDTAFDMGDLKEATPLAAKYLNVLQQLHLTVETRTAGKQGEENDGTNHVGNYLRLLETKDRKQKPEPAKRRASGSATS
Ga0247723_100122211	F031795	N/A	VTVYTPYPKVIFAGVNEYADNTISNISISLGRRDIYEQALVGIASVRLWTDADTALNVNLSDSIQIQIKDSTNTYRTIYTGTISDLDISLDAYGSEGSVAIYSITAVGPLAILNRFTTGSLGFSKEFDGTRVLNILSDAFLESWDEVVPTLTWSAVSSLATWDNWGGANQTLVDNLIADIDTPGTYELTAYSDGVTNALSLAQQAAQSGRGFLYEAPDGSIHYDSYTSRASLTPLTLTDDDLLAVGLRQAAQWSEIVNDVTLTYKNNQEKYAEDYTSQQSFGVLSGNRSTQLENGSDAQSQADAFLESRAFPRTYPEELTIPLHSPTVSDATRDALILMHVGSAIYTQDLPAVFGGTFDGFVEGIKWNLDRYTASMTLICSAISETYPHAIWLQIAPTVTWAGYTPTTTEWQDL
Ga0247723_100122218	F040539	AGGAG	MKWLKKYVSAITADTYTYVGLLIAYFTLDGSAKKVTGLLIIVGVVVYLVSLPLRDDDTPD
Ga0247723_100122222	F026507	GGA	MICEHGADAPKYCAICRHQGIMGKAEGITIAKESKLNWHDEAVICIRQMARTGKPFTAEDVVAEIGAPTGSGKVIGAAFNTVARSGMIWRCGERPADRKSSHRRMLAVWRGGQVQEQVRLFDE
Ga0247723_100122225	F040620	N/A	MTRWVQVKHDELLEYVAMVEYLRKDHTALQEQIKDAKELASIIEATYKERLDKLTDYILDIHPANYKYERGLMDAYNIVAGHEQKL
Ga0247723_10012225	F009679	AGGA	MALITISELKAVLGIGDIYADAIVQEVADAAENILLSYLIFDDVAIKGVSLTNNVARFYCYDNTFVVGQALTVSKCGAPFDGSRTVTKVGYDEYGVTFFEAAITNADITKRSIIPNGRALLTSQATMYDTGYPEVSEACLAIACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG
Ga0247723_10012227	F009526	GAGG	MTAVYITGRALTLTINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVEMYLDDTSSAGIISALWDAAKNAPDTSLAFSFDVNGDTFTGNLFPVFPTVGGAATDVLTTSLSFVVEDGAVTRT