Scaffold Ga0247723_1001069

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1001069
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16604
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (26.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026860	Metagenome	196	Y
F042341	Metagenome / Metatranscriptome	158	N
F082694	Metagenome	113	Y
F083898	Metagenome	112	N
F085382	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10010691	F026860	N/A	MSKPSELIARLMRELNASTEDTPPPAGFSTVDDIRAELRMAHTRNASSRAYDLFRRGLLERKAHQFKAKTGQCHKAYVYKPLPPYRSIREAAEGLFAHQADKVPKGWVRVVDYCFKARISDVALRGRISRANLKPKYYKTPRGIIGLHQNAYYWKPDLDRLFAKR
Ga0247723_100106910	F042341	N/A	MSSPRPKSDPPAVQYGEPHFTFRVLGRVKPTHDPKCPTPFGYCWKGYGDIHVDPRQTEEEMIDTVAHELLHDALPYLDEEAVEKAANRIASAMWKLGYRRTIIQ
Ga0247723_100106916	F083898	GAG	MSTIQPGDGYNLSASSSGFTLDINKPWTPPIGDPMVFALQLGNTRQLPEQLVYNIGVGGKPAPFECQILSVAGLRYLQIGVGAIGYTSSFMPIIKSGADTRIMQAFADKVQICPSGTRTYGDINPISPYQDPSYNPEWYMEAGGGYLLADTNDPITLWAFKWDVDVGVAPFSSSSVVNTGLPTLALIATSNTADTSKVTVDPGPSVYVQTMNVQKMTGYDAASTGLPLDWGHCHTSWLNPRKLGYSYKAIADITATANTFTMTCVQERPGIPMVQNQVQRVLLVGRASGGAAYISIGASTSVIPFPVTDVPPIYSNELTLAECLNSIPGITLTIDGEPVVFSLTGNVEVSRTTENSYYVTFCNELAGLNVPLLSFNTAGVTAYAYDFIITQYHTGNIDLTTPMQTGMVQLRNVANEDEASDPYNVNEAANWDQIANKAECVACTGFSGDVTTSGMLQMTSATNISVQYDGGSCIPEPGPVTPDHPYKVNFVSTSGGLDTFSIVTGATNNVIPGNIASQITVSSGAYDVWIKHPYLSPNFPDAGGFEWDMGTPVPADTDTEGYILIATVNGPTVTQIVTGSLWADRLKMGTQTAEYYFART
Ga0247723_100106921	F082694	N/A	MGTKSARQILEAAIASHLSAQTELAGVSIYTGDGADTNVLPKAIVLCDSARAPNDLPQGLGNYSCGTRITVFSSADDNTLAEHRARCAAVAGAMQDLTAIQAVFVAGGDALCYDVTPQSEDEGVNERSWASVFGYDILIVVNPQP
Ga0247723_100106923	F085382	N/A	MSIYDTFLPDFQSLLADIGVPATVGANLFLVGLSRPMNTPKFDSGGFVDQKMWTVRFAAATDPWTASDGRVGGQVATIASGVPIAALGEGKKFTVNGQVLRIKGQSYKQTSAVIELECVDDNQ