NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000889

Scaffold Ga0247723_1000889


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000889 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18858
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F000843Metagenome / Metatranscriptome864Y
F002130Metagenome / Metatranscriptome591Y
F002370Metagenome / Metatranscriptome566Y
F021067Metagenome / Metatranscriptome220Y
F021992Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100088910F000324GAGGMNTIAPRFTVTQDGTTLNVFHANVGEGLPRHEHLYSHLTMCHAGSVKLSNERRSLVMTKDTQPVNLVANEWHELEALEDGTVFVNVFAETKL
Ga0247723_100088914F021067AGGAMALKISIPTSNVGVPFTDAYARITNIFGNKDQVQYQVSVSANADARQANAQEVAQHAFYCPTPQGNLMDGLYADLKLQVGFENAQDC
Ga0247723_10008892F000843N/AMPLHHVHPSTLPTIWPIAFPLLKKAIDLDPEAYNPQFIEYSIRTGRVHLLVWEEPEEGITGACTIEIIDDPLERIAHVHLMGGKGVVREHVFDEAKDFMRRCGATKAQCWAKGTLVDMYKKMGLENTHQVMRVKL
Ga0247723_100088923F002370AGGAGMDAKKAVRKHEKNMHPGQKPTKLRAGGKTNSDMLKMGRGLAKVANQKAKG
Ga0247723_100088931F021992AGGAGMMQGDVLATHRNSSGTVYAQRTRVKGFSVCGVASQTGTLLLRNGGASGTVLIEIDIPSNSNPNSFYVNIPQQGVLFSTNVYATLTNIASVTVFYG
Ga0247723_10008898F002130N/AMSDEKLNANSTLDKVLGYVDSPFKLFAILVMGIVAFAGYFLWQNQEFMFDAYKESKKLPEINTSRADEASAMLFKKTGATVVAIFRVNPLFGSRVLYKAYTKEGRDKSIEDIDVGLFSQNAANNADVIKLMTNEIPCSEYRYAQSEVGLWYLEKGVTYTCRVSVPPDSHRFVGQITVGWAQQPENLEQIKFMLEIASAMLTKRGN
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