Scaffold Ga0247723_1000870

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000870
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19005
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (22.22%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F005633	Metagenome / Metatranscriptome	394	Y
F007260	Metagenome / Metatranscriptome	354	N
F009147	Metagenome / Metatranscriptome	322	N
F010835	Metagenome / Metatranscriptome	298	N
F028809	Metagenome	190	N
F050365	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100087011	F007260	N/A	MGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDASVWSCDVGSNGDRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK
Ga0247723_100087016	F002843	N/A	MIVPVNIVAVQVNANNSLFVTTGVDYDNSGSIVGSEITSQYTLNPGDSLEGQPTEVVNIANALWTPAVVEAYKLANPVVEAVQPNE
Ga0247723_100087020	F009147	N/A	MAVQADISTEYSMGREGFALVTSTAAQTGNWAGLIPTEPTVFTSITGFGISGTWTSKTIPAGFPLVGNITGFQILSGSVVAFLARS
Ga0247723_100087021	F005633	N/A	MRIATTIAVDKTGKTKLLAGPEIDATLQRTNFNTVSVPEGGKLILWIQGALAPKIRKG
Ga0247723_100087026	F028809	GGA	VEILNCQKPAGIESLRQNRIAIKAIERQTGLEFLSISDQEPSRIDGFIFDPAKGIITGIYEVKTRSYGLHKLQTTFGNEWMISWSKIQAALEVTRRTKLPFYGVLHLLDDNIVMMVEIFNRNASWAANHKVEDRLVNGIKDRMALINMATAMQYKMNQLF
Ga0247723_100087027	F050365	N/A	MPLTSPEEADAWRGSRKGIGGRPSTLQRMAAIQQQPAPELAGGPYRPPEASAAINAALATEDSPQGAYERQKKIERAAYDLAVEALQSRSLDAGRMVSVHATAAKNLISSRDDVLAQSEKERTLVSGAWVKKAMQEHDGAVSQLLKSMPKQLSGRIAPHDPEHAERELERWVQEVCLKTLHQTDPWKS
Ga0247723_10008709	F010835	AGGA	MNAVALRTERALVDWLAAEDWSESPIGTPTCLTSYGHGAFADPDLEDQMPSFPRIVVRASTAVPVHPLDRTCEVDITATLQLSADDTSEPQALAIVQIFENLLQYLYVDGNIAELDALDTNPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANEQ