NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000848

Scaffold Ga0247723_1000848


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000848 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19266
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000961Metagenome / Metatranscriptome820Y
F005737Metagenome391Y
F008303Metagenome / Metatranscriptome335Y
F027447Metagenome194Y
F053131Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100084814F000961N/AMMATPEIDLVKYGVLWQKVQDYERRFDDMDKKMDKMENQLTQLVALANQGRGGFWAGMALVSALSSVVGYISHWVGKSN
Ga0247723_10008482F027447AGGGGGMWKILEIQAEGDLITGARYFCSKNGVETEGWWKFAEPALNTPFADVNEEMVIGWVTADIGAQVEARLDEQAAVTQRVVVAPWLPQVFTPSI
Ga0247723_100084820F008303GGAMIDKIIFSALLGTVGFNGLFPDPPQPLTAAQLRVKAKEKSISEMCDRKPKSREAKDLCRRWKKQQGIL
Ga0247723_100084828F005737AGGAMFEIEKYTKPTDWAQVALWIVSIAALVVVALDVFVWRP
Ga0247723_10008486F053131AGGAMEYKWVVNKVQVADENLVVKAELTVTGTDGDKSASANYYRTFTRGDSFVPYEFLTEQQVLAWCFAPEVITWVDKDGAEQTITKHLKDEGEAQVAGQIERQLAQEQIEPALPWLEIPA
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