NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000796

Scaffold Ga0247723_1000796


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000796 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20231
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (81.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001097Metagenome / Metatranscriptome780Y
F001713Metagenome648Y
F001799Metagenome / Metatranscriptome632Y
F007203Metagenome / Metatranscriptome356Y
F007518Metagenome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100079610F001799AGGAMDKHLKAQWAKNLLNDDFFIEVIDNLKKQQISVIINTNSSDIGVREDAYRYIKTIELITGHLEGLASETLIKEKKWKIL
Ga0247723_100079613F007203AGGAGMYVERQGVNLAPKVKELEMRVEMLENVVKALQLDKPRMGRPPKDKHGTERVTVDNPSRD
Ga0247723_100079622F007518AGGAGMTEWTKEEDEAFNDVEKQSNLGKQILRDLGQPYHFDIYVSPSQRNVVLEEVALEIDKLKAFGDTAQSFAAFVRNMKT
Ga0247723_100079624F001713AGGAMKYEFDTTVGEGSVIVTVVMEYEQDEEGVYNENIEEIWFEGRNVMGIFTVEQYKELEIEGCMRLQKHLIEEADHSASVDYDMRGI
Ga0247723_100079627F001097GGAGMNFEWPINDSSRIGKLQGLRSPRVDTQIQQKEVDDWLKQSVALVAGSVRGLGTNQRRVRYFGFEKPHDEVTK
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