Scaffold Ga0247723_1000766

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000766
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20574
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025685	Metagenome	200	Y
F051792	Metagenome	143	Y
F057986	Metagenome	135	Y
F062555	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100076613	F062555	GGAG	MAIVDYAKPCMDAEKALKDAHNAVLENNFDEAMTKTMDALVSVRLMQGALRHMKEVHEKT
Ga0247723_100076625	F057986	AGGAG	MIATAKKLLSTPSPIELAARELVQAQRAKLEAESACEYAASMIQYNDDRINRLRVRLTELQGEMA
Ga0247723_100076626	F025685	GAG	VNTKRNMKYVLDFFALVGLVSTIIVVCFYIGYTTYNPPCHSVASILTKECKQ
Ga0247723_10007664	F051792	N/A	MNNRGYSRKFIEANRKADQSHLGVQLGRICITRDIPVQDAADFLGVSRQAVYLWFLGKSLPHPTMRETLHDVIKKLKARQPL