Scaffold Ga0247723_1000765

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000765
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20596
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (80.49%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F010612	Metagenome	301	Y
F015719	Metagenome / Metatranscriptome	252	Y
F022871	Metagenome	212	Y
F038155	Metagenome	166	Y
F046331	Metagenome / Metatranscriptome	151	N
F051888	Metagenome / Metatranscriptome	143	Y
F067677	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100076513	F015719	AGGAG	MTMYYTEVDGAEPTVSTQVGGIKYTFTNESLTKLIEEKEHLKIELAQVERKFKSAQFDVRELFQSNYDTDQTEILCDVDDVNNLLINIGAEALTKSWSATVTITATVTGIEAPNKDTAEDIIRDNIELSLTTDGDIWLDDVSMNSAYPEA
Ga0247723_100076515	F046331	N/A	MERPKRSFLFIRTGEQIVSHSEAPISITIKTASGSLVTVRASSGEELDAVVATGLAAITSATTELEQAIRGTVPTPMTVGAIASALGASISPMDNSTASLSGRNCPHGHMTAIQGTGKDGSTYRGYFCAAPKGAFDKCKNVYLKTTDAAWSTFVAEQVK
Ga0247723_10007652	F067677	AGGAG	MNTFSFESARVNKVWDNKNRFNLGIQDSRAVAQPDGSFKSVFVASRIVTTSDPDHLEFIRKNLVDSDDCVVNIRGYMETKAGKKPGTWYDNMVITELTLA
Ga0247723_100076520	F022871	AGGAG	MSESENVWESDEELWDFIGENKRLVGLQISNGQGLDILNALRDIYLTIDDDPKSAMKMLSLLATVIYASSIGEGQQFTDEIQVAAAMEQFDSSMKDIFNEESK
Ga0247723_100076522	F008296	AGG	MTDAWVDEYKLLVSTLASEYYRKYPVTEAEDIRQVLWVWFLTHPVKYTEWSKLPPKDKERLIARSLRNAALKYCEQEKARKVGYDISDLYYYDPSVIEAFLPSIIDNTYEIPSKIKDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNRLAEAKQNILRIRFSVENYEWSDLGKELNTSADGARMKVNRALSSLIKILGGWRTHSDLDVIETKEEVEEHE
Ga0247723_10007653	F051888	N/A	MTSFALSSSTQSFSCSHENPATQLDTRDEYCAECNLLQEGSSVEHALNFQEINRSEQESEPAQSSDIPDEKGFNHQWTNRDGEYLEGVYDITNRLPSWLYLGKHVFPMFKQDELNAYLALPSTDTICMVCHLQVNRFVGCQQCITPSQSLYNEIRRVMLL
Ga0247723_10007654	F038155	GGAG	MASNDRKNGKAYKKKPKVQKKTGKTIGGYSPAKLAIRAKKRGM
Ga0247723_10007656	F010612	AGGAG	MLNEDIPVWEHTVWILAKVRCRTTHINIDTAGDEALDDPSEWHVLEFDKGVKHSQEIVRV