NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000706

Scaffold Ga0247723_1000706


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000706 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21733
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (80.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010601Metagenome301Y
F021491Metagenome / Metatranscriptome218Y
F023804Metagenome208Y
F036595Metagenome169Y
F058809Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100070619F010601GAGGLALTDLMLSQWVSGDLELSQELRAGKVPVCIREDYTVYLEFFRGNLWIHVEIKRWSSGVKKDCLKSIALIENLIGKPIVALIREDDIKLVRFAKSFGWSEKCQISLLDGSKAFIYTNMV
Ga0247723_100070623F036595GGAGMIELLKQLMLAKANRPKPTVEEVEVQVWAFVVKSITIMVLGIAFGVLYLIGFEKQDPELAPIDGVFLEILKAIAFMGVGTMGGISGRKASTAIAKAIVGEDDATK
Ga0247723_100070627F058809AGAAGVFDPITIGAAFKAMQLAYDGITYCCEALSEGKVAVQKIKKATDDAQTIIKDTKSIFGFFKNLFGGSKPDTKQSDSKTSTEAKPVAKKKEVYTTHIPNETEIVQQFIGHLGAFFRHHKELTEYVEIKYEEVFASSDPDPETILELSVYKNELDQSYVKLSGMMRGAGVPHQLGPLWENYNNIYSKVQAEQLKRKEQIRIRRQIEAYKQERFRQEKIELGMGLFLVLIIVSWLYAVWINSFIEAF
Ga0247723_10007066F023804GAGGMTETLYKFNCEVEGVTLVCFLEHEPAEFNHGEAPDFPECMNLVNAFCGDIDIAHILMQSIVDHICEEALTQLNSESE
Ga0247723_10007068F021491AGGAMSVEKKIEEIVLGYLKKAEGRTAIMSPQDIGKLVSEAAHKGAMLGYDAGMQMARRSHGNELEIAELTVKELTERVKELETQMIAQQ
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