NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000637

Scaffold Ga0247723_1000637


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000637 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23191
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (8.47%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004154Metagenome / Metatranscriptome450Y
F013299Metagenome / Metatranscriptome272Y
F023045Metagenome / Metatranscriptome211Y
F024311Metagenome / Metatranscriptome206Y
F035224Metagenome / Metatranscriptome172Y
F070098Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100063711F023045N/AMRYELAQQFAEYQLPKEIKDAFKQGMQMIGSLNFTRMMMFANEVQLTNDDVDYFMNMKPQRSEDESYEGMKIRGRFSKALLKYRPHLYDYSVYNK
Ga0247723_100063717F035224N/AMACHYLTMKNSDEFYRKLKDRDADMILKMVKCVLSAYKRSKPSIDIFDITFKLLSDGLVFTIDKSQYKELLGNCMNDLIAMEEYELCAEIKKILEGKKKGRKLKEVL
Ga0247723_100063731F004154N/AMKNKFKYYLLRYWISMLFLIFAFYFYEPTPSIIHCSPDSISENIEPKTFLGLNEMTLMWVLMAIAHGANACYCDIKSILKKA
Ga0247723_100063732F013299N/AMKKKKAHQTKREWFIVMNSQLEYFSGMMYGGELVWCNDYKEAKPLDNERKFQTLKSLCYGEELILDYIS
Ga0247723_100063734F024311N/AMNSTHALHFDKYKAIDGTYFGFEIFDEVFKVINERGYGNQDNMFKAGVASAEAAVRRLREEYYEAISKSMMDM
Ga0247723_100063741F070098N/AMEIKDILSELITVATNVLNEKGQPENFDLEDFITTMEDYYEELDEIGAFHFENDSDGYEFDEDEY
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