NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000570

Scaffold Ga0247723_1000570


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000570 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24817
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (69.01%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000868Metagenome / Metatranscriptome853Y
F001176Metagenome / Metatranscriptome756Y
F003690Metagenome / Metatranscriptome473Y
F004666Metagenome / Metatranscriptome428Y
F007921Metagenome / Metatranscriptome342Y
F009143Metagenome / Metatranscriptome322Y
F029439Metagenome / Metatranscriptome188Y
F082666Metagenome / Metatranscriptome113N
F084237Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10005701F029439AGGAGMNSLNIVIDASHPMASSNTGNPLVFRNSVGNYMSRKAYLEMLASKEGCVSHRYLSPSESQWLMGVR
Ga0247723_10005702F009143GAGGMMTKWDTIQEDVKDAYVYLDEEEMYNKALEEGVIDFGSDEYDEDELSKSLTLDWND
Ga0247723_10005703F003690GGAMTISGFELIVSNEYGLEFDSFLGSIYLPWHTIIIITLSVIAYKIYKRFYK
Ga0247723_100057032F000868AGAAGMSDPHGTIGHYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLYADYCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEK
Ga0247723_100057035F082666AGGAMIEKAEAIDTRLQNAVDLGISGIDIMHGELKILMLVAEQELANAQAIEDETEEAMDSMERKYWEGMLDAYTELYKMTYDLSFAIGARNDN
Ga0247723_100057037F000441AGGAGGMSDAYINDQLNKAQQLLWGGSETENIEAHNIISKLIRDRVEQTEGQ
Ga0247723_100057040F004666N/AMITKGSTNMATKREYLKTQGITVGLRGRFSSAAVKAISEAEAQGIKFEAEKKQAKK
Ga0247723_100057044F007921GGAGLGEVRRTSEIYGGEWHMINWLVNRIFKWDPLREAVFDEVGLYQSVTRSMWEHEKEGPTNLTWSEGDRWYGWTYNKDKKRYYFDDIGNESLMGLWEDQWLREADEQPA
Ga0247723_100057045F084237AGAAGMMNSEAKSAAEREDPQTNPDLDRSMRLKLVIEEMLKDIDMSGEEWNDHDKDGVPYWEKYEERLRYMEENGI
Ga0247723_100057051F001176GGAMDTPPNNTPSGAVTSQEAARKNPSQGRFKSGIGAKRPPTIVDKNKHGIRRETIITPKKTKPKKV
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