Scaffold Ga0247723_1000531

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000531
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25974
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (12.20%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F016965	Metagenome / Metatranscriptome	243	Y
F061550	Metagenome	131	Y
F094950	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100053113	F061550	N/A	MELQILKSRVILHKTLLKLKASREEIEEKNAHRTDLINSMLETESELSEVLTTFLILEKQAREHSQSSHRLERINLDLKSEMKQLENELKVNNF
Ga0247723_100053117	F010918	N/A	MKRYKVTYNYFESGKKRIAIRILQALDREHAIMQMAMWPQLILKVEKL
Ga0247723_100053124	F010620	N/A	MKKLLAFLSVLTLFSCSSERLAQYHYKKALKHGLKLVQDSDTIRITTVDSIPVMVNDTIIWEKVITTKDSVIFFNNIYVPKTRWQTRIEYKYKTQILKQDVLKYKYIYKEAKIQKAKTNWRLFFIGFICGVALFFILRLIDKLYNPFK
Ga0247723_100053133	F094950	N/A	MVTILGRDIPNRIEELTIEQFESITDINNNKEIDPVDRHLQIFEYLGIPEKEFFDFDIADFIDIVKEFNTVPEAMGDIEPVGVLELDGFTYTAELKLTVRETKLIEKIAIHKQKGYISDMMAVMFKADHLTTAEHYSEAHLKLKSKHIRKLKAEICIPYIMFVANKIKKQIENVPTEAVE
Ga0247723_100053135	F001883	GAG	MGRYANTGEFNVLYPTRRRMATILKRIIRDDILNPTGSTLIDSIRINAKITGGFEILEIQIVAAYYFIYLNNGVPQTANQYGKNGGSIVPRDFVEKFTYELGSAGITKEIYDQYVEWLTKRYKILDVAPILEKNQKLVYTFEALFAPPDFNQGYPLRV
Ga0247723_100053136	F016965	N/A	MLNTFTYNGIEYTITGAIEVISDTQLHIETDNGIILVDDTMDIYKELTNG
Ga0247723_100053138	F004366	AGCAG	MNSLQAITNHITAFYTAHKQVFKVGCDFKEQLYNFATQDEKYPLVYIVPSNVLPTENTTEFSFDIYCFDIIQKDRANIITILSDTQQILNDLYIYYMDSNDYSFDVVGVPTFAPLNNDLLDYAAGWQMSITLTVNDWTDCAVPI