Scaffold Ga0247723_1000488

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000488
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27385
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018701	Metagenome / Metatranscriptome	233	Y
F019436	Metagenome / Metatranscriptome	229	Y
F042300	Metagenome / Metatranscriptome	158	N
F047646	Metagenome / Metatranscriptome	149	Y
F082114	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100048812	F047646	GGA	MSILNELREQAGLNGPAAALANEMLVIHENYAQGQLTSEEYGFLLQEIADIRAQQELASDEIACRWIVAAAQGLLAVM
Ga0247723_100048816	F018701	GGA	MSALSDKYEQDVARYIDKIPGVKATRPPGDTGYADVKVTYGTTTSWMEVKMNHTDNLSNPRVFYSNGNWKTTYTTPAAHAAVEILNKSSFSKDFVKKIALFSGIPINKIKLPTTKGGLKEDGAVPLEVMKKYFDQPNVNRYIANQENYNLGKLVTEHYTLGKKAPAYYMQAADDFYLISKFDPFKLGADRIPILAGMGDFKVRVATRSDFYEIQAEIKITKMPNSKYSLKPGTQKKNPFL
Ga0247723_100048817	F042300	GGA	MQCNFEFLENANYDWMDMLNFYERPFRAKFIPSKVWQDLDNYCNDSKGLSNYFKKWRTKVEFLPQKSKAKMYDNYVAVGGEYGPDERQCCIQIYTTAFDRFPFTHDTWNKFKYRIIQTQMHELIHFMQFDRRGDEWSNYVVPYKKVKHEKKNIERRYLSEFDEIQAYAHCVLLDFKTYKPTITTEELINRAKHSKDSSTLNYILKAFNYDYRNNAAIPKLMQQIAKWDRKYQRTIRASRRPK
Ga0247723_100048819	F082114	GGAG	MTTVIGGIMHNAATGDMKVTATGDMKVMTDTGLVSISNGGISTGSLTVSSGTVSSSTLSFGGFDMEDFLDTHSFNKITVEHKVAEFELAKLKETVPTYADEIKENLSKNLARDIIKKTTFTKKHNVDSDTHHFLGRVWVFTEDELKNLIQEARNA
Ga0247723_100048833	F019436	AGGGGG	MFYGKDTVEQNFDVLLRKLEQQELFLFEPMPSYKEGARWTDEFRIRDGHTKLADGTWVTIHKVTTWVENLKKDTTELYEQNTKQSREISLLKQQKYEMEYGLRVAEKSLKNSLALTKEMIDE