Scaffold Ga0247723_1000480

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000480
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27586
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (72.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F010821	Metagenome	298	Y
F035727	Metagenome	171	Y
F091631	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100048024	F010821	AGGAGG	MTDFTFSLTDFNATTILVVANTPDAKQYLAERYGLGCVSVEIRKSAAPEFADSFEFQGLSYA
Ga0247723_100048028	F035727	GGAG	VNHEHRQIANSILARHKDGEQFSQSAIDQALRDTGDIAPDGGEVLDQTVQKESNGGGQSRGMGMVAENLIRLSKKTWTTRR
Ga0247723_100048034	F091631	AGGA	MAQIMKNQPKGYGTHATMSGNPAASDKTGEKGSAKKGIPAAKTNMTGPDKAFDGGRSSGVCYTHDRKCSQ
Ga0247723_10004808	F000961	N/A	MEIDPVKYGVLWQKVQDYERRFDQMETKIDKLESSIEKLVALANQGRGGFWAGMALVSAFSSIVGYVSHWVGKN