Scaffold Ga0247723_1000431

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000431
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29065
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (15.91%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F016965	Metagenome / Metatranscriptome	243	Y
F033725	Metagenome / Metatranscriptome	176	Y
F035679	Metagenome	171	Y
F061680	Metagenome / Metatranscriptome	131	Y
F096907	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100043114	F033725	N/A	LFKNYNMITILNKEIPNQLEELTIEQFEAITDINNNQELDPIDKHLQVFAYLGIPENEFWDYDVADFVGMVKEFNSTERKEYPVVEELEIDGYIYKAQMKLTVRDTKMIEKVALRKEKGYISEMLAIMFKREDLTPTEHYTDAHIKQKAKLIRKLNAAISIPYMMFIAQKIGQQANDQATEAVEPSNS
Ga0247723_100043116	F001883	N/A	MARYANTGEFNVLYPTRRRMANILKRIIRNDVVDGEGTLVESIRINAKVTGFQKLEIQIVAMYYFIFLNNGAFLWNGGVITPRDFVAQFTEELNNAGITAEIYRQYTEWLTKKYPLVQAVEVLEKQQKIVYTFEAVDPPAGFTPGFPLDV
Ga0247723_100043117	F016965	N/A	MFSINETEYTITGPIEVVSDTQLHVETDKGIILVDDTMDIYKELING
Ga0247723_100043119	F004366	N/A	MNSLQAIIDHIEQFYNNHLQVKKVGSDFKEQIFNFATKDEKYPIVFVVPVTVNPADNTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYVYFTYSNDYSFDVIGIPNFQPLNNDLLDYAAGYVMNITLTVNDWTDCAVPLSGN
Ga0247723_10004312	F061680	N/A	MQVTIGIEVAYFDYDDVHGNCEFKITNITDESYEVEISNVLATQVIGEVELDYIITDTELDQLKEEIMWCIQDTNLVRDMQDPMNYFDEDEWRYDA
Ga0247723_100043134	F096907	N/A	VKTREEFFEAAVIAAMQGLLASSGHYRDELIKNPCEYVANAARQYADELTEQLYGPELPVIKERLF
Ga0247723_10004315	F035679	N/A	MRLSIIILSLVSTIFATSCSAPKRAQWHYKKALKNGLQVVQDSDTIRITTVDSIPVIHNDTIVYEKFYTTKDTVIQFNNVYVPKTRWQTRIEYRYKTRVERIRGKTIYKTAKAQQVIKYKILWWPVIVAFIFGILLRFLIQKGLLDRIALLFKL