Scaffold Ga0247723_1000426

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000426
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29243
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (28.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010620	Metagenome	301	Y
F019139	Metagenome / Metatranscriptome	231	Y
F037224	Metagenome	168	Y
F094950	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100042628	F010620	GAG	MPTYDSNAREFMRYILPIIALCLLGSCSDAKKAQYHYKKAVKFGLELVPDSDTIRIISVDSVPVVVNDTIIWEKVIRTKDTIINFKNIYVPKTKWQTRIEYRYKTQLVKQDVLKYKYIYKAEKKQKAKTNWLLFIIGFGCGIALFFILRLLDKLYNPFK
Ga0247723_10004263	F019139	N/A	MKTKTEHLGKYITMYNGNFETSFTVTEETAKDHVYYTSKGLGYLFEESTPKAKYKGVENEEKKEKDAEA
Ga0247723_100042637	F094950	N/A	MVTILGREIPNKIEELTIEQFEAITDINNNKEIDPVDRHLQIFEYLGIPEKEFFDFDIAEFIDIVKEFNSAQDPMQNQEAVTILELDGFTYTAELKLTVRETKLIEKIAIHKQKGYISDMMAVMFKADHLTNAEHYAEAHLKLKSKLIRKLKAELCIPYIMFVANKVKNQVENVPTEAVE
Ga0247723_100042645	F037224	AGGAG	MIVTMHSDTLHKIQVVQAYIHHKTGKHVRIVFNRPDRMQQHMAMLDHAYLIAMGGFKNNNSNDTNIGKDK