Scaffold Ga0247723_1000366

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000366
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31321
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (73.47%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F004432	Metagenome / Metatranscriptome	438	Y
F005117	Metagenome	411	Y
F012435	Metagenome / Metatranscriptome	280	Y
F017968	Metagenome	237	Y
F029755	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100036611	F004432	N/A	MVTKKPPAKVAPVKRRTPRPKPEQTINVSLAAPAAKPEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILHAITTQDKMPQLAKQENLLAPARSLLKDVDGIVLLVHKANLSTNSRTTVLALNIDGSREKSIEGSITSLFNASSDRNGAMVSMLNGEVLCEEFKPSSKVGEWGIKQGVKFMCRGSIPPDMGKFAGYVAIGFKDKPEDIVALKTRINLAATDMSE
Ga0247723_100036612	F005117	GGA	VKISYDKWYPIVQPNHAMQTEAFAKRVERLDAERAVQVQVDKQVKKFHQYEYEIYEFRMRQITINIDIANLKRNIDRLV
Ga0247723_100036613	F000332	N/A	MRWLILLLLLGLVSAVAKNGCHVREFYGIGYTVHDPTERHKEMLAWLIHNAKHCKSKDYVVMWNNLPDWAGTADTVILRSKIIYGYKDALDREKK
Ga0247723_100036614	F012435	N/A	MRLRLSRKPEMSDIDLVKYGVLWQKVESMEAKIDKLEANMETLIALANKGRGGFWMGMALVSGVSSIFGYISHYWSK
Ga0247723_10003662	F029755	AGGA	MIDYKLHYYFDDVVSYDNGTTLENVKVGYDYYPAEINMPHDHNSAEIYDVSVYNLKGDDISYDLPLSEFEHIMSETKIHHARMLKEQNEI
Ga0247723_100036647	F017968	N/A	MKQTEFLIGSEKASNLASLSLQERLNLRETMRQSEAMEWIKRFKKKTLEEGRGEAQYWWQQTLADIAKRRGQAAADDLRKRMNEQKDKK