Scaffold Ga0247723_1000353

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000353
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31566
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (14.55%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F028175	Metagenome / Metatranscriptome	192	Y
F039140	Metagenome / Metatranscriptome	164	Y
F041777	Metagenome	159	Y
F071242	Metagenome / Metatranscriptome	122	Y
F082704	Metagenome	113	N
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100035319	F023350	N/A	VKLDQYIDGHYKKFKELAKGISRGEDFYEDLLHDCLLSMFGSKHIEKLIETGEFEFYLIRVMYLSVNSPNSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKQKIRANVIRKKQ
Ga0247723_100035323	F041777	N/A	MKTNNQMKKTLLFIALLFGAMLIAGTIDEQTRQLEQQPNTINK
Ga0247723_100035333	F091602	N/A	MKSDLTFCPNCDKELLDERIQEVLTDQNLEDWDCAYEVIDDDGEIKLCSDCQEWDDADDDAKGEGWD
Ga0247723_100035335	F012871	N/A	MLRNASTTTLTITQRVDRAERESAFVADYDLPTFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELTKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAEAIEEKSQQIKENEMAVNDDSWRRMLDEDVQSFKQGKMTTLELRGVSMMRWLEESKRITAETFTDDEYNLCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKEAIQFEGFRELYKLYLSKQ
Ga0247723_100035339	F019140	N/A	MKNTPLYESLKMTYEREREIVNSLANYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMSKNNEEN
Ga0247723_100035343	F082704	N/A	MPESKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIQFSLKFYIPESKVKLKEQK
Ga0247723_100035344	F021113	AGGA	MRKNLLFAVLLVVGTAIIWTVICWNWWGRDKAKDVHVEIQKQDSVINYNAGEYDRLLQEQIELYKQLRTYEDAQSKAKTTYQRNRSAVIIRDTIVRVDVIRLVNSCDSVIASDSLVINNLKEQLNVEGLKVENLQEVVEAYEQKTDILTEEINTLNVENKKLDKQKKRRNHALIFTTSVAALSTFVLSVLL
Ga0247723_100035346	F039140	N/A	MKEWLKSLLTSCSKVSSKRVIAIFVVINLIVLSYVATFTYYVCPIAMFDTLALLTGGMFGGTVIEKFTKSKINEGRNQENTSDNS
Ga0247723_10003535	F071242	N/A	MEQTSKVHLQNKADAMLACLEFLKLNIKTETEFGKVANGKRQLKLWKHYALKVTRISVNVAFWIFILYKLLF
Ga0247723_10003537	F028175	N/A	MAITINDQPYEYTPIGQRLMIVASSTNVANAGFRFVFDFGSFQVNVQPNAANKGVLDLAPIFREQLQHDASLLTTSADTENSSVAFISCTIKEGWLVDGVFTVSGLGMADIDDVYAFLAEYQVADGYKPNPNTRYALDGITKYLMSERTTDTHKWSEAPSRGLSSDWVYIPTRLSDYGVMYAPSSSALLVDNDFDIAVFTSYDDTDTVIDTQFLTMESNSSIVNVIGSYYANINLWGGLDLTGAKYYTIQLGKETAFPIYTPSSRVYCFYLVADDCRFDNVRLGWTNTCGGTDYFNFTKKSELSFNYDRKQYQKVVGSYNASSFTFNTYDRGVTDRYVTTTKGLQINSDWVSVGEFNLLQTLCRSNDVFIINDDGTQTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL