NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000345

Scaffold Ga0247723_1000345


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000345 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31856
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (57.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037719Metagenome / Metatranscriptome167Y
F039621Metagenome / Metatranscriptome163Y
F040943Metagenome / Metatranscriptome161Y
F070854Metagenome / Metatranscriptome122N
F071976Metagenome / Metatranscriptome121Y
F089836Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100034516F071976AGGAMKYRVIVNGVSFYTTGAAIKRGVGDSVGVNAAVRQLFECMFNAVGVSSTMTVYDHKMNRISYNVQISKV
Ga0247723_100034519F037719N/AMNDELRALVVKAGAPAPLLNELWFSIFCQQFANVLLTEAEKEVFGEKCE
Ga0247723_100034524F039621GAGMKILFVFIVILVLLVIFPIATIWSLNTLFPALAIPVTLETWMATVILGGVVGGTNGVSFGGKK
Ga0247723_100034530F070854AGGAVKALAILCLAVCTNAYADVSFGTGEDRDCNIARASAISDALEQYAVKEFEVKKQYVCKERNAEGIECQYIKKTEIESAGTLRKVLNETVKDRRDSCVVEVKIEVEQGRQLAGDILNAQEIALDGKLYRFDVITKEPLYVYLFSVYGDKMHLMYPYDGIKSNLIDGRLTLPRGWNAVVPDGINESKETLMAVFTKHKITFRSSMTRDEIYRQISSVPIYSRRVVYHNFVIRRI
Ga0247723_100034574F089836AGGAMKTIQQQETEAILSMVENMKMLEQQLADAKKRITELETVIVNQRAVIKELQ
Ga0247723_100034581F040943N/AVHNKRGEFCSRSCGNTRKHKPETKEKIGKAKSAWLTSGTDEAEAQVHSFTSLGANQTPDPVAPIRDNMGSGRFVQDGDLWEEV
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