Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1000309 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33079
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (72.88%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

33079

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (72.88%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003150	Metagenome / Metatranscriptome	504	Y
F011648	Metagenome / Metatranscriptome	288	Y
F022814	Metagenome	212	Y
F024503	Metagenome	205	N
F086791	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100030925	F022814	AGG	MKMRGLCSLGVNYMRLNPEVLKNLYASLYCCYPFTKWPMPLPEEIEFVVTADPEVMGTYLLDTGEDYSHTITISSGRCSHFYTVLTTLAHECVHMSFHKQKGEKWMQHGKPFRTRCKMVASELGFDPLEL
Ga0247723_100030937	F011648	AGGAG	MSEQDQDFYSFQQHLERIFKDLEDGVFITADEIGDLRYACGLPSPVRKNPVLQAVFNDYFNIFRSKQ
Ga0247723_100030942	F086791	GGA	MSNNYLFSMYCGNTYLDVYGYIDKDEPSVGHVGGIEIEDVCTCDTKTSVWEMIHALNFDKFNEQAQMAWSERNDK
Ga0247723_100030943	F024503	AGCAGG	LVRTERQMKYLLLLTPLALAACSSFEPPNVNLETDKQAFHMSRAQVILGITECEDAGTRPVVITAKRRINGVMSDVPVEVTCNPRYKIFH
Ga0247723_100030951	F003150	AGG	VSDPFGITNGVKQVTSSINESVKASQELSKAIDGVLEVADKAAKDRANARKKARQVNFDTTTIIEAVDEWQRLLIARQSESRIKEQITKKYGSNAWEEIQGIKARKQWEDKRDKYLEQHDRRVMKSVMLLCYLFAAWVSYELTWGMWR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1000309

Overview

Ecosystem & Geography

Associated Families

Sequences