Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1000288 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33884
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (17.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33884

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (17.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010833	Metagenome	298	Y
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F032653	Metagenome	179	N
F043784	Metagenome / Metatranscriptome	155	N
F048948	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100028816	F010833	N/A	MKNKDLLQLVANLNAVIGNQDTKTQKKLFKIYEKVKSYHEGYQAEVEILRLDNAQTDDKDCLLLDEKGNYRYSKEGIKKLTKDIEALNDKEFDFQIINVVNQSGLQDFTFLQDWVTGVEFNKQEEEEL
Ga0247723_100028818	F032653	N/A	MRLILLALLLTSCASVKKFEKRYDSTGTTKIDSVRLTFYDSVTKIIEKEQIFTKEVTIYDTIRIAKDSFVVIPKIVTKWIYQTKEKETDNSLIKKDTIAFNRTETAQISIADKNKVSTQNNFWKALIGLIIAIILILAYWNKLWK
Ga0247723_100028829	F019816	N/A	MRELLPFERQMLLAEVYHYAWYNEDAYADLLLFIEKYQNLLDKPVFLTPINNNDTETTNLEPLAFGQNIDTNPGFNEVQ
Ga0247723_100028833	F011074	AGCAG	MQLVGINNPGDVKLAILEDWIRTEYGNFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKVLENRTFDRLFNPLSVFTKLNSTGIKVWTKEDGALAKKKLMEIITYKANKMDIISAKQYRDEWTESWLKNQARAVAVALFFEEQIKIGKVSFS
Ga0247723_100028845	F048948	GAGG	MRKLRAIWLLITHKVYFLAVCKTGKDGDDMTTIGHYTYAMAETLINKHIADVDTYLDQEDALDEANDIINGIL
Ga0247723_10002887	F043784	N/A	MNAKDAIMQIRALFEDMPQVEAPAPIEAPIEEVPVTFAEYSLMDGTKVMISELAIGGEVTLADGTPAPTGEHQLADGTQIELDENAKIISIETPEAEAEIADETPAEMGKKMDEKMADEIAALVSENENLKTQVAQLEAKVKNGFSQVAELIEALTKTPNAEPIAQPRNNFGSNVTTHNMKYDRIEKFRNALLNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1000288

Overview

Ecosystem & Geography

Associated Families

Sequences