NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000271

Scaffold Ga0247723_1000271


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000271 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34722
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (77.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004362Metagenome / Metatranscriptome442Y
F006502Metagenome / Metatranscriptome371Y
F032194Metagenome / Metatranscriptome180N
F046894Metagenome150N
F073146Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100027135F006502N/AMKEKGMSIMIGLLGKEPKMAEKSEGGLLESDTESCPLSTVDADINKGNKKKAILTANYGSRKDGEGKCKACEYYETGEEMTKCGVGKGMGHCAIFDFVCADENGCQAWEAKGSEEEMEMEDEE
Ga0247723_100027137F004362AGGAMTLDDRLRNWAWYVSGSVIPQPDSTCRSFEKNYIPELGNLYAPEEPHYEPDNQDGELIEDAVKGLPLELRKILKARYVSHPYASQNQLAHHLRISTRRFETDLHNAKKRLQDQLDKKAKAKDYADLLKVSGEKDNREWDFRDIQQWD
Ga0247723_100027151F046894AGGGGGMKSYDSWLEDGVDQGSLQDQQEYVWTTYMKQGKPCDPMDLDNFQEYLADATADYKGAEKWENLRQYADKGEWEKFGRAIYFLVHDHIEDKLIAEEE
Ga0247723_100027155F032194GAGGMRNKHCMEAFYRTLKEIDIPTGQSIICEHFFASGWDAAIDALSLAYQRQFEHDGVDTQLIRRDPQEPIADDDKE
Ga0247723_100027156F073146N/AMSEPVSQAVMTVTEVAPFQFSIEIVGSDLSLEVSQIMVKFLNDCLQQIHADQKIH
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Institute for Fundamental Biomedical Research
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