Scaffold Ga0247723_1000256

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000256
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35413
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (73.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001433	Metagenome	695	Y
F026544	Metagenome / Metatranscriptome	197	Y
F030062	Metagenome / Metatranscriptome	186	Y
F063399	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100025622	F063399	AGGAG	MTTFTTEDRKNASPPHIVDSGASIKTLADYIEQETREEMLRNQLHLLQDRIRELEAETLKLRRQIEQLTSEKW
Ga0247723_100025626	F026544	GAGG	MRKVSIRTVENTIGLARSVANGTTKFPFMGYCADLMEKMLEEIKELRKAQEK
Ga0247723_100025628	F030062	GGAG	MIVTILNLFALFVATCAVLIFAVVFIFFLFIMYACIHIGWREIKGMPLSELWERIQK
Ga0247723_10002567	F001433	GGTGG	VIKKPDDALSKLLAYVDSPFKLFAVILMAILTFGGWLFYENQELIVGTYKESQKLPSIVEDRVDDAAVHLFKTTDATVVAVFKVNPLFGTRVQYRAYTKTGRDKTNDGLDVGLFTSNQANNQDVVALMAGNVPCGEYKAAQSEIGLWYLEKGMTFGCRISVPPDPSRFVGQITVGWDKPPADLEQTKAMLFIAATMLSRSKK