Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1000241 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36126
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (95.31%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

36126

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (95.31%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005320	Metagenome / Metatranscriptome	405	Y
F042293	Metagenome / Metatranscriptome	158	N
F049625	Metagenome	146	Y
F058807	Metagenome	134	Y
F074881	Metagenome / Metatranscriptome	119	Y
F088893	Metagenome / Metatranscriptome	109	N
F099290	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100024128	F099290	AGGAG	MTLEFETKAGLVFGLEADQLFIMDENDIMTEEPVPVIYLHIGFLTLAFILD
Ga0247723_100024131	F042293	GGAG	VNATITFEELKEALKRLDEVSLLELLGLQSDDLVERFDDIIEKKQEYLIKELD
Ga0247723_100024134	F058807	AGGAGG	VNVDLIKEHEDGSATFQFDLTADEAQALLSYGILEAIKAGIRSGDKLTVEGVDLEDTSDT
Ga0247723_100024139	F005320	AGGA	MSIDSIKPVKVAGELYWSNWMKEYNKKFNEANDKYECTLGQLSDAACAKLEELGIKLKDKDTMGKYIVGKSKFLFEPVDEEGNPVDISKIGNGTKCYALVSSYRHKMSAKFGAAPSIKKLVITELKVYSPEGAEEQETADDVL
Ga0247723_100024140	F074881	GAGG	MVFNIEPNEAAFIVRVIGQLPTESGAFPLHQKLVEQFQAQEKQQEVAPVTAE
Ga0247723_100024141	F088893	AGG	MSKIIEKNQILFNVEGDTFKVKIGEDLDLEEVYTVLASALVYLEDLAMGNMAHPQSNELH
Ga0247723_100024157	F049625	GAGG	MLSEIDLKDWDEQPSKPLYDVPKETPIKTHVGLLWFKHVDGMYSLCYDADGKTVHLAAWSTVNPFKRKDK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1000241

Overview

Ecosystem & Geography

Associated Families

Sequences