Scaffold Ga0247723_1000208

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000208
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37808
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (86.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001531	Metagenome / Metatranscriptome	676	Y
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F011647	Metagenome / Metatranscriptome	288	Y
F018684	Metagenome / Metatranscriptome	233	Y
F052382	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100020812	F001706	AGG	MKHWEHHPTPIDGCFGCKGLTLQMNSGDAKRDIPDKKWNSELQAYRDARAQGIQPAGTTMRHVQEAHRASEVLGKAYNADTMPKTKDITPKAATVMKEIGQI
Ga0247723_100020815	F011647	GAG	MSSGQRKRHDGWNKSIMRDGVVVILRKDGSEKVRLDPRTKEILKGSK
Ga0247723_100020819	F001599	AGG	MSKKDSVALIWCDNGMVDGKFMQGVADVMLKSGVEFATTLRSQGNQIARQRQTSIDYWYDKTEHEWLLWIDSDVVISPEKFKLLWDNKDAEKRPLITGVYFTTDTPEEPLMAPLPTVFNFVNNGDGGFGLTRVHPLPVNQLIKVDAAGMGFVLMHRSIVPKLREIAPDGQLFMEMGRGTKFIGEDIFFFVLCDKAEVPLYCHTGATVPHMKRFSFDEHYYAAFFGKPKEEPKSKLVTPNKKIITPR
Ga0247723_100020838	F018684	GAG	MANEDWKLQVSYKTPSGDMINIRANTADELSVLLEGVGDYSPQIAATQQKIVGSYALNPSLTTSSTTSTKPSKYSAPTPVSVVSGTAAPVCKHGARIWREGISKASGKPYAFWACPSPQGTPDQCKPVN
Ga0247723_100020840	F009064	GAG	MIIQLNKDEVRVCTLLAVERWLAKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPYYPNALHKKRHSLPDVGENVEVRSVRTQDSIPFWAKDKGKIIIGTKCLDTEYYSEVEIFGVAYPEEFIKPEYYDSYINGWRIPISGFTHE
Ga0247723_100020841	F052382	N/A	MSSYGKRKGATFETGVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWTKRAGK
Ga0247723_100020843	F008808	AGG	MDRIIPPCPECGKRFNNVFEATDHILEDDEEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETHPAAMKDIVEEMIIESQMMDIDNEIKHFLGRNSNE
Ga0247723_100020847	F001531	GGA	MDWDSIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQRWKAKSVGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE